Welcome to OMICS integrator!
This application integrates different OMICS analysis applications.
Upload your analysis files.
Select the type of analysis type to do: VolcanoPlot, PCA, etc, and select the analysis application to use.
Provide the data for your analysis application.
Execute the analysis application selected. For a type of analysis several applications can be available.
Select an application
For the selected analysis type the following applications are available.
This application allows to upload the files from an omic data study and run different omic data analysis applications.
The application menu is divided in the following options:
Home: introduction page of the application.
File manager: allows to upload the files from an omic data study.
Run analysis: allows to select the omic data analysis application, providing the files required by the application and execute it.
Help: application manual.
Terms & Conditions: terms & conditions of usage for the application.
About Us: details about the VHIR team.
To run the omic data analysis applications, the user must provide the files from the omic data study. These files can be uploaded in the
File Manager option. The file manager is divided into 3 sections:
- On the left side, it allows you to select a file, configure the options and add it to the file manager.
- On the right side, the
Uploaded filessection shows the files available in the file manager.
- On the right side, the
File previewsection shows a preview of the data of the last uploaded file.
Add a file
To add a file to the file manager:
Select the CSV file from the directory where it is stored on the computer.
Configure the file options:
Header: indicates if the first line of the file corresponds to the header with the names of the fields.
Separator: field separator.
Decimal separator: decimal separator for numeric data.
The File preview panel shows a preview of the file data using the configured options.
Define the file type: TopTable, expression array, etc.
- Click the
Add filebutton. In the
Uploaded filespanel the added file is displayed.
Remove a file
To delete a file from the file manager, press the
Delete button displayed for the corresponding file.
After uploading the study files to the application as described in the previous section, this option allows to the user to select the analysis application and the required data required to run the analysis.
Analysis type panel, select the type of analysis to be performed in the
Select the type of analysis field. When selecting an analysis type, a description of the analysis type is displayed next to the previous field, and at the bottom the applications that have been integrated into the system to perform this type of analysis. For example, in the following image we can see that when selecting the VolcanoPlot type of analysis, there are 2 applications: VolcanoPlot and VolcanoPlot 2.
Moving the mouse over the applications displays a panel with additional information about the application and a button to select it.